It sound like you have set one Adjustment Panels fly-out menu option at one poin in time. Adobe introduced Bugs in CS4 they don't seem to want to fix. The Adjustment layer was added to your document at a point in time that Adjustment Panel Fly-out menu Item Do not add Layer mask was most likely checked. If the Layer was added by an action it or script it may well have been added differently the the way the action or script was created to work. To create actions that add adjustment layer these days you need to edit the actions and change the way Adjustments layers are added. Actions need to add them in a way that how the fly-out options are set is not relevant. In other words all-way have an active selection present when an action add a adjustment layers. The layer will have a Layer mask. And All-way record adding the adjustment layer using the layer menu Layer>Add Adjustment Layer>Type and check the clip to previous option is the popup add adjustment layer dialog. That way the Adjustment layers will be clipped. If you record an action that add an adjustment layer any other tou have no way of knowing how the layer will be added if you using a version of Photoshop newer the CS3.
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